Whole Genome Sequencing
Introduction
De nova sequencing is typically performed without prior knowledge of the sequencing data. De nova sequencing has proven successful in confirming and expanding upon results from database searches, providing excellent resources for understanding a species. Some of the most crucial information, obtained by resequencing of an organism's genome DNA, are the individual variations in the genome, such as single nucleotide polymorphism (SNP), copy number variation (CNV), and structural variation (SV)
Sequencing Platforms
- HiSeq 2500/4000, HiSeq X, NovaSeq 6000
- NextSeq 500, MiSeq
- PacBio RS 11, PacBio Sequel
Data Analysis*
De nova Sequencing
- Standard Data Analysis• Standard Data Analysis
- Consensus sequence assembled into contigs
- Consensus sequence assembled into contigs
- Advanced Data Dnalysis- Gene prediction & annotation
- Gene prediction & annotation
- Gene prediction & annotation
Resequencing
- Standard Data Analysis
- Mapping to the current reference genome
- Analysis of mapping statistics
- SNPs and lnDels calling
- Variant list in vcf or Excel formats
- Advanced Data Analysis
A variety of options for mapping algorithms, variant detection algorithms, annotations, mapping to public databases
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